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Import Log for GBIF national node type records France

  • Started: June 02, 2021 11:54
  • Completed: 12:15:24
  • Failed: No.
  • Status: completed

Events (most recent first):

show warnings (15)
  • 12:15:24 (ends) Complete
  • 12:15:24 (ends) TOTAL TIME: 21.1m
  • 12:15:24 (starts) TraitBank::Denormalizer.update_resource_vernaculars
  • 12:15:22 (starts) Resource#fix_native_nodes
  • 12:15:22 (warns) Trait Publishing failed: At https://eol.org/data/meta_traits_1027_chunk_9.csv @ position 9534949 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'SYNTYPES IN HIST. FIS. POL. CHILE ZOOL., 2 : 2"",,,,,,,,false OccurrenceMetadatum-37551141,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/recordedBy,gay,,,,,,,,false OccurrenceMetadatum-37551142,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/locality,valparaiso,,,,,,,,false OccurrenceMetadatum-37551143,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/decimalLatitude,-33.083,,,,,,,,false OccurrenceMetadatum-37551144,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/decimalLongitude,-71.683,,,,,,,,false OccurrenceMetadatum-37653955,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/institutionCode,MNHN,,,,,,,,false OccurrenceMetadatum-37870258,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/catalogNumber,A-6640,,,,,,,,false OccurrenceMetadatum-38310954,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/collectionCode,IC,,,,,,,,false Trait-217289671,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/countryCode,CO,,,,,,,,false Trait-217309744,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/scientificName,Saurauia laevigata Triana & Planch.,,,,,,,,false Trait-217504682,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/typeStatus,http://rs.tdwg.org/ontology/voc/TaxonName#Type,,http://rs.tdwg.org/ontology/voc/TaxonName#Type,,,,,,false OccurrenceMetadatum-37130205,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/recordedBy,"T"T' FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:525:in `merge_triple' << /app/lib/trait_bank/slurp.rb:416:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:416:in `each' << /app/lib/trait_bank/slurp.rb:416:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:314:in `block (2 levels) in load_csv'
  • 12:15:15 (warns) FAILED on build_nodes query (MetaData), will re-try once...
  • 12:15:15 (warns) At https://eol.org/data/meta_traits_1027_chunk_9.csv @ position 9534949 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'SYNTYPES IN HIST. FIS. POL. CHILE ZOOL., 2 : 2"",,,,,,,,false OccurrenceMetadatum-37551141,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/recordedBy,gay,,,,,,,,false OccurrenceMetadatum-37551142,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/locality,valparaiso,,,,,,,,false OccurrenceMetadatum-37551143,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/decimalLatitude,-33.083,,,,,,,,false OccurrenceMetadatum-37551144,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/decimalLongitude,-71.683,,,,,,,,false OccurrenceMetadatum-37653955,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/institutionCode,MNHN,,,,,,,,false OccurrenceMetadatum-37870258,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/catalogNumber,A-6640,,,,,,,,false OccurrenceMetadatum-38310954,R1087-PK217326097,http://rs.tdwg.org/dwc/terms/collectionCode,IC,,,,,,,,false Trait-217289671,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/countryCode,CO,,,,,,,,false Trait-217309744,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/scientificName,Saurauia laevigata Triana & Planch.,,,,,,,,false Trait-217504682,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/typeStatus,http://rs.tdwg.org/ontology/voc/TaxonName#Type,,http://rs.tdwg.org/ontology/voc/TaxonName#Type,,,,,,false OccurrenceMetadatum-37130205,R1087-PK217326112,http://rs.tdwg.org/dwc/terms/recordedBy,"T"T'
  • 12:15:10 (infos) Importing data from meta_traits_1027_chunk_9.csv
  • 12:13:50 (infos) Importing data from meta_traits_1027_chunk_8.csv
  • 12:12:31 (infos) Importing data from meta_traits_1027_chunk_7.csv
  • 12:11:12 (infos) Importing data from meta_traits_1027_chunk_6.csv
  • 12:08:50 (infos) Importing data from meta_traits_1027_chunk_5.csv
  • 12:07:32 (infos) Importing data from meta_traits_1027_chunk_4.csv
  • 12:06:14 (infos) Importing data from meta_traits_1027_chunk_3.csv
  • 12:04:55 (infos) Importing data from meta_traits_1027_chunk_2.csv
  • 12:03:39 (infos) Importing data from meta_traits_1027_chunk_1.csv
  • 12:03:20 (infos) Importing data from traits_1027_chunk_2.csv
  • 12:00:35 (infos) Importing data from traits_1027_chunk_1.csv
  • 12:00:29 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 12:00:29 (starts) Remove traits
  • 12:00:29 (starts) Fixing native nodes...
  • 12:00:29 (warns) Skipping reindexing. You should reindex soon.
  • 12:00:29 (infos) importing 410 Pages
  • 12:00:29 (infos) importing 1000 Pages
  • 12:00:29 (infos) importing 1000 Pages
  • 12:00:28 (infos) importing 1000 Pages
  • 12:00:28 (infos) importing 1000 Pages
  • 12:00:28 (infos) importing 1000 Pages
  • 12:00:28 (infos) importing 1000 Pages
  • 12:00:27 (infos) importing 1000 Pages
  • 12:00:27 (infos) importing 1000 Pages
  • 12:00:27 (infos) importing 1000 Pages
  • 12:00:27 (infos) importing 1000 Pages
  • 12:00:26 (infos) importing 1000 Pages
  • 12:00:26 (infos) importing 1000 Pages
  • 11:59:53 (starts) create_new_pages
  • 11:59:52 (starts) PageCreator
  • 11:59:52 (starts) restoring vernacular preferences...
  • 11:59:48 (starts) #propagate_ids ContentSection
  • 11:59:45 (starts) #import ContentSection
  • 11:59:45 (warns) MISSING http://content.eol.org/data/gnntrf/publish_content_sections.tsv [404] (10 bytes); skipping
  • 11:59:45 (starts) ContentSection
  • 11:59:45 (starts) #propagate_ids Reference
  • 11:59:45 (starts) #import Reference
  • 11:59:45 (warns) MISSING http://content.eol.org/data/gnntrf/publish_references.tsv [404] (10 bytes); skipping
  • 11:59:45 (starts) Reference
  • 11:59:45 (starts) #propagate_ids ImageInfo
  • 11:59:45 (starts) #import ImageInfo
  • 11:59:45 (warns) MISSING http://content.eol.org/data/gnntrf/publish_image_info.tsv [404] (10 bytes); skipping
  • 11:59:45 (starts) ImageInfo
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