dcsimg

Import Log for iDigBio type specimen records

  • Started: February 10, 2022 09:01
  • Completed: 10:17:12
  • Failed: No.
  • Status: completed

Events (most recent first):

  • 10:17:07 (warns) Trait Publishing failed: At https://eol.org/data/tdfidbdt/publish_metadata_chunk_6.csv @ position 20910899 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Davis,W.J. ",,,,,,,,false OccurrenceMetadatum-51255764,R1091-PK254237330,http://rs.tdwg.org/dwc/terms/identifiedBy,"DD' FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:560:in `merge_triple' << /app/lib/trait_bank/slurp.rb:447:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:447:in `each' << /app/lib/trait_bank/slurp.rb:447:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:331:in `block (2 levels) in load_csv'
  • 10:16:52 (warns) FAILED on build_nodes query (MetaData), will re-try once...
  • 10:16:52 (warns) At https://eol.org/data/tdfidbdt/publish_metadata_chunk_6.csv @ position 20910899 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Davis,W.J. ",,,,,,,,false OccurrenceMetadatum-51255764,R1091-PK254237330,http://rs.tdwg.org/dwc/terms/identifiedBy,"DD'
  • 09:26:45 (warns) FAILED on build_nodes query (MetaData), will re-try once...
  • 09:26:45 (warns) The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout.
  • 09:19:06 (warns) Found 6630120 rows, will break up into 250000
  • 09:14:43 (warns) Found 475231 rows, will break up into 250000
  • 09:09:13 (warns) Skipping reindexing. You should reindex soon.
  • 09:08:00 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_content_sections.tsv [404] (8 bytes); skipping
  • 09:08:00 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_references.tsv [404] (8 bytes); skipping
  • 09:08:00 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_image_info.tsv [404] (8 bytes); skipping
  • 09:08:00 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_attributions.tsv [404] (8 bytes); skipping
  • 09:08:00 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_media.tsv [404] (8 bytes); skipping
  • 09:07:59 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_articles.tsv [404] (8 bytes); skipping
  • 09:07:59 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_vernaculars.tsv [404] (8 bytes); skipping
  • 09:06:41 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_identifiers.tsv [404] (8 bytes); skipping
  • 09:06:40 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_bibliographic_citations.tsv [404] (8 bytes); skipping
  • 09:06:12 (warns) MISSING https://content.eol.org/data/tdfidbdt/publish_referents.tsv [404] (8 bytes); skipping
  • 09:06:10 (warns) All existing content has been destroyed for the resource.