dcsimg

Import Log for NMNH type specimens

  • Started: November 23, 2021 17:01
  • Completed: 00:55:33.000
  • Failed: No.
  • Status: completed

Events (most recent first):

  • 21:42:08.000 (infos) Importing data from publish_metadata_chunk_4.csv
  • 21:33:00.000 (infos) Importing data from publish_metadata_chunk_3.csv
  • 21:25:56.000 (infos) Importing data from publish_metadata_chunk_2.csv
  • 21:20:51.000 (infos) Importing data from publish_metadata_chunk_1.csv
  • 21:20:33.000 (infos) adding new metadata
  • 21:17:53.000 (infos) Importing data from publish_traits_chunk_20.csv
  • 21:14:50.000 (infos) Importing data from publish_traits_chunk_19.csv
  • 20:34:28.000 (infos) Importing data from publish_traits_chunk_18.csv
  • 19:55:51.000 (infos) Importing data from publish_traits_chunk_17.csv
  • 19:19:13.000 (infos) Importing data from publish_traits_chunk_16.csv
  • 18:44:36.000 (infos) Importing data from publish_traits_chunk_15.csv
  • 18:11:56.000 (infos) Importing data from publish_traits_chunk_14.csv
  • 17:41:12.000 (infos) Importing data from publish_traits_chunk_13.csv
  • 17:12:30.000 (infos) Importing data from publish_traits_chunk_12.csv
  • 16:46:19.000 (infos) Importing data from publish_traits_chunk_11.csv
  • 16:22:16.000 (infos) Importing data from publish_traits_chunk_10.csv
  • 15:59:41.000 (infos) Importing data from publish_traits_chunk_9.csv
  • 15:39:24.000 (infos) Importing data from publish_traits_chunk_8.csv
  • 15:20:55.000 (infos) Importing data from publish_traits_chunk_7.csv
  • 15:03:14.000 (infos) Importing data from publish_traits_chunk_6.csv
  • 14:48:17.000 (infos) Importing data from publish_traits_chunk_5.csv
  • 14:35:26.000 (infos) Importing data from publish_traits_chunk_4.csv
  • 14:24:41.000 (infos) Importing data from publish_traits_chunk_3.csv
  • 14:15:08.000 (infos) Importing data from publish_traits_chunk_2.csv
  • 14:08:26.000 (infos) Importing data from publish_traits_chunk_1.csv
  • 14:08:25.000 (infos) adding new traits
  • 14:01:42.000 (infos) removing all traits
  • 14:00:48.000 (infos) polling for trait diff metadata: /resources/520/publish_diffs.json
  • 14:00:48.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 19:25:46.000 (ends) Complete
  • 19:25:46.000 (ends) TOTAL TIME: 2.4h
  • 19:25:46.000 (starts) TraitBank::Denormalizer.update_resource_vernaculars
  • 19:25:40.000 (starts) Resource#fix_native_nodes
  • 19:25:40.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:545:in `merge_triple' << /app/lib/trait_bank/slurp.rb:432:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:432:in `each' << /app/lib/trait_bank/slurp.rb:432:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:329:in `block (2 levels) in load_csv'
  • 19:23:23.000 (infos) Importing data from publish_traits_chunk_10.csv
  • 19:00:46.000 (infos) Importing data from publish_traits_chunk_9.csv
  • 18:40:04.000 (infos) Importing data from publish_traits_chunk_8.csv
  • 18:21:24.000 (infos) Importing data from publish_traits_chunk_7.csv
  • 18:04:04.000 (infos) Importing data from publish_traits_chunk_6.csv
  • 17:49:40.000 (warns) FAILED on build_nodes query (Trait), will re-try once...
  • 17:49:40.000 (warns) The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout.
  • 17:48:15.000 (infos) Importing data from publish_traits_chunk_5.csv
  • 17:35:34.000 (infos) Importing data from publish_traits_chunk_4.csv
  • 17:24:56.000 (infos) Importing data from publish_traits_chunk_3.csv
  • 17:15:38.000 (infos) Importing data from publish_traits_chunk_2.csv
  • 17:08:59.000 (infos) Importing data from publish_traits_chunk_1.csv
  • 17:08:54.000 (infos) adding new traits
  • 17:08:53.000 (infos) removing all traits
  • 17:07:46.000 (infos) polling for trait diff metadata: /resources/520/publish_diffs.json
  • 17:07:46.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo