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Import Log for Global Biotic Interactions

  • Started: October 14, 2021 12:23
  • Completed: 13:01:54
  • Failed: No.
  • Status: completed

Events (most recent first):

show warnings (26)
  • 13:01:54 (ends) Complete
  • 13:01:54 (ends) TOTAL TIME: 27.3m
  • 13:01:54 (starts) TraitBank::Denormalizer.update_resource_vernaculars
  • 13:01:47 (starts) Resource#fix_native_nodes
  • 13:01:47 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/admin.rb:178:in `block in remove_with_query' << /app/lib/trait_bank/admin.rb:174:in `loop' << /app/lib/trait_bank/admin.rb:174:in `remove_with_query' << /app/lib/trait_bank/admin.rb:74:in `remove_all_traits_for_resource' << /app/lib/trait_bank/slurp.rb:602:in `remove_traits'
  • 12:47:53 (infos) removing all traits
  • 12:47:27 (infos) polling for trait diff metadata: /resources/20/publish_diffs.json
  • 12:47:27 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 12:47:27 (starts) Fixing native nodes...
  • 12:47:27 (warns) Skipping reindexing. You should reindex soon.
  • 12:47:27 (infos) importing 181 Pages
  • 12:47:27 (infos) importing 1000 Pages
  • 12:47:26 (infos) importing 1000 Pages
  • 12:47:26 (infos) importing 1000 Pages
  • 12:47:26 (infos) importing 1000 Pages
  • 12:47:25 (infos) importing 1000 Pages
  • 12:47:25 (infos) importing 1000 Pages
  • 12:47:25 (infos) importing 1000 Pages
  • 12:47:24 (infos) importing 1000 Pages
  • 12:47:24 (infos) importing 1000 Pages
  • 12:47:24 (infos) importing 1000 Pages
  • 12:47:23 (infos) importing 1000 Pages
  • 12:47:23 (infos) importing 1000 Pages
  • 12:47:23 (infos) importing 1000 Pages
  • 12:47:23 (infos) importing 1000 Pages
  • 12:47:22 (infos) importing 1000 Pages
  • 12:47:22 (infos) importing 1000 Pages
  • 12:47:22 (infos) importing 1000 Pages
  • 12:47:21 (infos) importing 1000 Pages
  • 12:47:21 (infos) importing 1000 Pages
  • 12:47:21 (infos) importing 1000 Pages
  • 12:47:20 (infos) importing 1000 Pages
  • 12:47:20 (infos) importing 1000 Pages
  • 12:47:20 (infos) importing 1000 Pages
  • 12:47:19 (infos) importing 1000 Pages
  • 12:47:19 (infos) importing 1000 Pages
  • 12:47:18 (infos) importing 1000 Pages
  • 12:47:18 (infos) importing 1000 Pages
  • 12:47:18 (infos) importing 1000 Pages
  • 12:47:18 (infos) importing 1000 Pages
  • 12:47:17 (infos) importing 1000 Pages
  • 12:47:17 (infos) importing 1000 Pages
  • 12:47:17 (infos) importing 1000 Pages
  • 12:45:42 (starts) create_new_pages
  • 12:45:41 (starts) PageCreator
  • 12:45:41 (starts) restoring vernacular preferences...
  • 12:45:37 (starts) #propagate_ids ContentSection
  • 12:45:37 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF contentsections: got 0, expected 0 (from /app/tmp/Globi_content_sections.tsv)
  • 12:45:34 (starts) #import ContentSection
  • 12:45:34 (warns) MISSING http://content.eol.org/data/Globi/publish_content_sections.tsv [404] (10 bytes); skipping
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