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Import Log for Global Biotic Interactions

  • Started: October 14, 2021 13:03
  • Completed: 13:32:36
  • Failed: 15:19:07
  • Status: undefined method `start' for #<ImportLog:0x00005570ee96d778> Did you mean? status

Events (most recent first):

  • 16:11:49 (infos) Removing trait and metadata files
  • 16:11:46 (infos) Importing data from publish_metadata_chunk_12.csv
  • 16:10:40 (infos) Importing data from publish_metadata_chunk_11.csv
  • 16:09:05 (infos) Importing data from publish_metadata_chunk_10.csv
  • 16:07:35 (infos) Importing data from publish_metadata_chunk_9.csv
  • 16:05:23 (infos) Importing data from publish_metadata_chunk_8.csv
  • 16:04:12 (infos) Importing data from publish_metadata_chunk_7.csv
  • 16:03:09 (infos) Importing data from publish_metadata_chunk_6.csv
  • 16:02:07 (infos) Importing data from publish_metadata_chunk_5.csv
  • 16:01:00 (infos) Importing data from publish_metadata_chunk_4.csv
  • 15:59:51 (infos) Importing data from publish_metadata_chunk_3.csv
  • 15:58:45 (infos) Importing data from publish_metadata_chunk_2.csv
  • 15:57:42 (infos) Importing data from publish_metadata_chunk_1.csv
  • 15:57:41 (infos) adding new metadata
  • 15:57:34 (infos) Importing data from publish_traits_chunk_12.csv
  • 15:54:46 (infos) Importing data from publish_traits_chunk_11.csv
  • 15:51:50 (infos) Importing data from publish_traits_chunk_10.csv
  • 15:48:10 (infos) Importing data from publish_traits_chunk_9.csv
  • 15:45:11 (infos) Importing data from publish_traits_chunk_8.csv
  • 15:42:19 (infos) Importing data from publish_traits_chunk_7.csv
  • 15:39:32 (infos) Importing data from publish_traits_chunk_6.csv
  • 15:36:47 (infos) Importing data from publish_traits_chunk_5.csv
  • 15:33:14 (infos) Importing data from publish_traits_chunk_4.csv
  • 15:30:29 (infos) Importing data from publish_traits_chunk_3.csv
  • 15:27:40 (infos) Importing data from publish_traits_chunk_2.csv
  • 15:24:46 (infos) Importing data from publish_traits_chunk_1.csv
  • 15:24:44 (infos) adding new traits
  • 15:24:44 (infos) removing all traits
  • 15:24:18 (infos) polling for trait diff metadata: /resources/20/publish_diffs.json
  • 15:24:18 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 15:19:07 (errors) undefined method `start' for ImportLog Did you mean? status
  • 15:19:07 (errors) gem:bootsnap-1.7.5/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:22:in `require_with_bootsnap_lfi'
  • 15:19:07 (errors) gem:bootsnap-1.7.5/lib/bootsnap/load_path_cache/core_ext/kernel_require.rb:31:in `require'
  • 15:19:07 (errors) bin/rails:4:in `<main>'
  • 13:32:36 (ends) Complete
  • 13:32:36 (ends) TOTAL TIME: 28.8m
  • 13:32:36 (starts) TraitBank::Denormalizer.update_resource_vernaculars
  • 13:32:28 (starts) Resource#fix_native_nodes
  • 13:32:28 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/admin.rb:178:in `block in remove_with_query' << /app/lib/trait_bank/admin.rb:174:in `loop' << /app/lib/trait_bank/admin.rb:174:in `remove_with_query' << /app/lib/trait_bank/admin.rb:74:in `remove_all_traits_for_resource' << /app/lib/trait_bank/slurp.rb:602:in `remove_traits'
  • 13:26:40 (infos) removing all traits
  • 13:26:15 (infos) polling for trait diff metadata: /resources/20/publish_diffs.json
  • 13:26:15 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 13:26:15 (warns) There were NO new pages, skipping...
  • 13:24:32 (starts) create_new_pages
  • 13:24:30 (starts) PageCreator
  • 13:24:30 (starts) restoring vernacular preferences...
  • 13:24:26 (starts) #propagate_ids ContentSection
  • 13:24:26 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF contentsections: got 0, expected 0 (from /app/tmp/Globi_content_sections.tsv)
  • 13:24:22 (starts) #import ContentSection
  • 13:24:22 (warns) MISSING http://content.eol.org/data/Globi/publish_content_sections.tsv [404] (10 bytes); skipping