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Started:
April 11, 2024 13:36
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Completed:
18:31:50
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Failed:
No.
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Status:
completed
Events (most recent first):
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10:31:58
(infos)
Importing 128000 rows from publish_metadata_chunk_3.csv
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10:25:55
(infos)
Waiting 6 minutes for the last 'chunk' to be added to neo4j...
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10:25:28
(infos)
Importing 128000 rows from publish_metadata_chunk_2.csv
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10:21:26
(infos)
Waiting 4 minutes for the last 'chunk' to be added to neo4j...
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10:20:59
(infos)
Importing 128000 rows from publish_metadata_chunk_1.csv
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10:20:58
(warns)
Found 2980195 rows, will break up into 128000
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10:20:56
(infos)
adding new metadata
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10:20:53
(infos)
Importing 128000 rows from publish_traits_1676047141.tsv
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10:20:53
(infos)
adding new traits
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10:20:53
(infos)
not removing any traits
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10:20:14
(infos)
Connecting to https://content.eol.org/ ...
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10:20:14
(infos)
/data/Globi/publish_traits_1676047141.tsv: Scheme missing.
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10:20:13
(warns)
USING wget TO RETRIEVE FULL FILE...
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10:20:13
(warns)
TRUNCATED RESPONSE! Got 581192727 bytes out of 798115280 from https://content.eol.org/data/Globi/publish_traits_1676047141.tsv
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10:19:56
(infos)
Connecting to https://content.eol.org/ ...
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10:19:56
(infos)
polling for trait diff metadata: /resources/20/publish_diffs.json?since=1712827333
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10:19:56
(starts)
#publish_traits = TraitBank::Slurp.load_resource_from_repo
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10:19:56
(starts)
Running
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10:16:58
(starts)
There is no (remaining) trait content for [Global Biotic Interactions](https://eol.org/resources/396), job complete.
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10:11:40
(starts)
Removing trait content for [Global Biotic Interactions](https://eol.org/resources/396)...
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20:16:39
(ends)
Complete
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20:16:39
(ends)
TOTAL TIME: 2.5h
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20:16:39
(warns)
Trait Publishing failed: Couldn't load the external resource at: https://eol.org/data/Globi/publish_traits_1676047141_chunk_11.csv FROM /gems/ruby/2.7.0/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:555:in `merge_triple' << /app/lib/trait_bank/slurp.rb:440:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:440:in `each' << /app/lib/trait_bank/slurp.rb:440:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:327:in `block (2 levels) in load_csv'
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20:16:39
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) FROM: #merge_triple QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/Globi/publish_traits_1676047141_chunk_11.csv' AS row WITH row WHERE (row.determined_by_uri IS NOT NULL AND TRIM(row.determined_by_uri) <> '')
MATCH (trait:Trait { eol_pk: row.eol_pk })
MATCH (determined_by:Term { uri: row.determined_by_uri })}
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20:16:39
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/Globi/publish_traits_1676047141_chunk_11.csv' AS row WITH row WHERE (row.determined_by_uri IS NOT NULL AND TRIM(row.determined_by_uri) <> '')
MATCH (trait:Trait { eol_pk: row.eol_pk })
MATCH (determined_by:Term { uri: row.determined_by_uri })
MERGE (trait)-[:determined_by]->(determined_by)} MESSAGE: Couldn't load the external resource at: https://eol.org/data/Globi/publish_traits_1676047141_chunk_11.csv
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20:15:17
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_11.csv
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19:53:10
(infos)
Waiting 22 minutes for the last 'chunk' to be added to neo4j...
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19:51:45
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_10.csv
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19:31:39
(infos)
Waiting 20 minutes for the last 'chunk' to be added to neo4j...
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19:30:18
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_9.csv
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19:12:11
(infos)
Waiting 18 minutes for the last 'chunk' to be added to neo4j...
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19:10:48
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_8.csv
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18:54:41
(infos)
Waiting 16 minutes for the last 'chunk' to be added to neo4j...
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18:53:27
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_7.csv
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18:39:21
(infos)
Waiting 14 minutes for the last 'chunk' to be added to neo4j...
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18:37:53
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_6.csv
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18:25:48
(infos)
Waiting 12 minutes for the last 'chunk' to be added to neo4j...
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18:24:26
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_5.csv
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18:14:22
(infos)
Waiting 10 minutes for the last 'chunk' to be added to neo4j...
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18:13:01
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_4.csv
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18:04:58
(infos)
Waiting 8 minutes for the last 'chunk' to be added to neo4j...
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18:03:27
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_3.csv
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17:57:24
(infos)
Waiting 6 minutes for the last 'chunk' to be added to neo4j...
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17:56:11
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_2.csv
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17:52:09
(infos)
Waiting 4 minutes for the last 'chunk' to be added to neo4j...
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17:50:56
(infos)
Importing 128000 rows from publish_traits_1676047141_chunk_1.csv
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17:50:55
(warns)
Found 2511025 rows, will break up into 128000
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17:50:54
(infos)
adding new traits
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17:50:54
(infos)
not removing any traits
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17:50:14
(infos)
Connecting to https://content.eol.org/ ...
