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Started:
April 19, 2021 11:42
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Completed:
11:52:01
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Failed:
No.
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Status:
completed
Events (most recent first):
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11:52:01
(ends)
Complete
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11:52:01
(ends)
TOTAL TIME: 89.859020524s
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11:52:01
(starts)
Resource#fix_native_nodes
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11:52:01
(warns)
Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:262:in `block (2 levels) in load_csv' << /app/lib/trait_bank/slurp.rb:261:in `each' << /app/lib/trait_bank/slurp.rb:261:in `block in load_csv' << /app/lib/trait_bank/slurp.rb:302:in `break_up_large_files' << /app/lib/trait_bank/slurp.rb:254:in `load_csv'
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11:50:39
(infos)
Running validity checks for traits_755.csv
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11:50:39
(starts)
#publish_traits = TraitBank::Slurp.load_resource_from_repo
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11:50:39
(starts)
Remove traits
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11:50:39
(warns)
There were NO new pages, skipping...
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11:50:39
(starts)
create_new_pages
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11:50:39
(starts)
PageCreator
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11:50:39
(starts)
restoring vernacular preferences...
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11:50:35
(starts)
#propagate_ids ContentSection
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11:50:33
(starts)
#import ContentSection
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_content_sections.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
ContentSection
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11:50:33
(starts)
#propagate_ids Reference
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11:50:33
(starts)
#import Reference
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_references.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
Reference
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11:50:33
(starts)
#propagate_ids ImageInfo
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11:50:33
(starts)
#import ImageInfo
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_image_info.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
ImageInfo
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11:50:33
(starts)
#propagate_ids Attribution
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11:50:33
(starts)
#import Attribution
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_attributions.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
Attribution
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11:50:33
(starts)
#propagate_ids Medium
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11:50:33
(starts)
#import Medium
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_media.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
Medium
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11:50:33
(starts)
#propagate_ids Article
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11:50:33
(starts)
#import Article
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_articles.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
Article
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11:50:33
(starts)
#propagate_ids Vernacular
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11:50:33
(starts)
#import Vernacular
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_vernaculars.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
Vernacular
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11:50:33
(starts)
#propagate_ids NodeAncestor
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11:50:33
(starts)
#import NodeAncestor
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11:50:33
(starts)
NodeAncestor
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11:50:33
(starts)
#propagate_ids ScientificName
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11:50:33
(starts)
#import ScientificName
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11:50:33
(starts)
ScientificName
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11:50:33
(starts)
#propagate_ids Identifier
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11:50:33
(starts)
#import Identifier
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11:50:33
(warns)
MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_identifiers.tsv [404] (10 bytes); skipping
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11:50:33
(starts)
Identifier
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11:50:33
(starts)
#propagate_ids BibliographicCitation
