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Import Log for Global Biotic Interactions

  • Started: October 14, 2021 18:39
  • Completed: 18:56:14.000
  • Failed: No.
  • Status: completed

Events (most recent first):

show warnings (26)
  • 18:56:14.000 (ends) Complete
  • 18:56:14.000 (ends) TOTAL TIME: 16.3m
  • 18:56:14.000 (starts) TraitBank::Denormalizer.update_resource_vernaculars
  • 18:56:07.000 (starts) Resource#fix_native_nodes
  • 18:56:07.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/admin.rb:178:in `block in remove_with_query' << /app/lib/trait_bank/admin.rb:174:in `loop' << /app/lib/trait_bank/admin.rb:174:in `remove_with_query' << /app/lib/trait_bank/admin.rb:74:in `remove_all_traits_for_resource' << /app/lib/trait_bank/slurp.rb:602:in `remove_traits'
  • 18:52:08.000 (infos) removing all traits
  • 18:51:42.000 (infos) polling for trait diff metadata: /resources/20/publish_diffs.json?since=1634242309
  • 18:51:42.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 18:51:42.000 (warns) There were NO new pages, skipping...
  • 18:50:10.000 (starts) create_new_pages
  • 18:50:08.000 (starts) PageCreator
  • 18:50:08.000 (starts) restoring vernacular preferences...
  • 18:50:04.000 (starts) #propagate_ids ContentSection
  • 18:50:04.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF contentsections: got 0, expected 0 (from /app/tmp/Globi_content_sections.tsv)
  • 18:50:01.000 (starts) #import ContentSection
  • 18:50:01.000 (warns) MISSING http://content.eol.org/data/Globi/publish_content_sections.tsv [404] (10 bytes); skipping
  • 18:50:01.000 (starts) ContentSection
  • 18:50:01.000 (starts) #propagate_ids Reference
  • 18:50:01.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF references: got 0, expected 0 (from /app/tmp/Globi_references.tsv)
  • 18:50:01.000 (starts) #import Reference
  • 18:50:01.000 (warns) MISSING http://content.eol.org/data/Globi/publish_references.tsv [404] (10 bytes); skipping
  • 18:50:01.000 (starts) Reference
  • 18:50:01.000 (starts) #propagate_ids ImageInfo
  • 18:50:01.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF imageinfos: got 0, expected 0 (from /app/tmp/Globi_image_info.tsv)
  • 18:50:00.000 (starts) #import ImageInfo
  • 18:50:00.000 (warns) MISSING http://content.eol.org/data/Globi/publish_image_info.tsv [404] (10 bytes); skipping
  • 18:50:00.000 (starts) ImageInfo
  • 18:50:00.000 (starts) #propagate_ids Attribution
  • 18:50:00.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF attributions: got 0, expected 0 (from /app/tmp/Globi_attributions.tsv)
  • 18:50:00.000 (starts) #import Attribution
  • 18:50:00.000 (warns) MISSING http://content.eol.org/data/Globi/publish_attributions.tsv [404] (10 bytes); skipping
  • 18:50:00.000 (starts) Attribution
  • 18:50:00.000 (starts) #propagate_ids Medium
  • 18:50:00.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF media: got 0, expected 0 (from /app/tmp/Globi_media.tsv)
  • 18:50:00.000 (starts) #import Medium
  • 18:50:00.000 (warns) MISSING http://content.eol.org/data/Globi/publish_media.tsv [404] (10 bytes); skipping
  • 18:50:00.000 (starts) Medium
  • 18:50:00.000 (starts) #propagate_ids Article
  • 18:50:00.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF articles: got 0, expected 0 (from /app/tmp/Globi_articles.tsv)
  • 18:50:00.000 (starts) #import Article
  • 18:50:00.000 (warns) MISSING http://content.eol.org/data/Globi/publish_articles.tsv [404] (10 bytes); skipping
  • 18:50:00.000 (starts) Article
  • 18:50:00.000 (starts) #propagate_ids Vernacular
  • 18:50:00.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF vernaculars: got 0, expected 0 (from /app/tmp/Globi_vernaculars.tsv)
  • 18:50:00.000 (starts) #import Vernacular
  • 18:50:00.000 (warns) MISSING http://content.eol.org/data/Globi/publish_vernaculars.tsv [404] (10 bytes); skipping
  • 18:50:00.000 (starts) Vernacular
  • 18:48:54.000 (starts) #propagate_ids NodeAncestor
  • 18:48:54.000 (warns) INCORRECT NUMBER OF ROWS DURING IMPORT OF nodeancestors: got 2039076, expected 2039076 (from /app/tmp/Globi_node_ancestors.tsv)
  • 18:47:52.000 (starts) #import NodeAncestor
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