dcsimg

Import Log for Global Biotic Interactions

  • Started: April 14, 2024 10:30
  • Completed: 12:17:07
  • Failed: No.
  • Status: completed

Events (most recent first):

  • 20:18:48 (infos) /data/Globi/publish_metadata.tsv: Scheme missing.
  • 20:18:48 (warns) USING wget TO RETRIEVE FULL FILE...
  • 20:18:48 (warns) TRUNCATED RESPONSE! Got 576990239 bytes out of 747585637 from https://content.eol.org/data/Globi/publish_metadata.tsv
  • 20:18:05 (infos) Connecting to https://content.eol.org/ ...
  • 20:18:05 (infos) /data/Globi/publish_traits_1676047141.tsv: Scheme missing.
  • 20:18:04 (warns) USING wget TO RETRIEVE FULL FILE...
  • 20:18:04 (warns) TRUNCATED RESPONSE! Got 418119463 bytes out of 798115280 from https://content.eol.org/data/Globi/publish_traits_1676047141.tsv
  • 20:17:31 (infos) Connecting to https://content.eol.org/ ...
  • 20:17:29 (infos) polling for trait diff metadata: /resources/20/publish_diffs.json?since=1712961110
  • 12:17:07 (ends) Complete
  • 12:17:07 (ends) TOTAL TIME: 1.8h
  • 12:14:10 (warns) FAILED on build_nodes query (MetaData), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 12:14:10 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 12:14:10 (warns) ...re-trying.
  • 12:09:10 (warns) FAILED on build_nodes query (MetaData), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 12:09:10 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 12:09:10 (warns) ...re-trying.
  • 12:04:10 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 12:04:10 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 12:04:10 (infos) Importing 128000 rows from publish_metadata_chunk_3.csv
  • 11:58:09 (infos) Waiting 6 minutes for the part 3 of 24 to be added to neo4j. Nodes: 0; Traits: 0
  • 11:57:42 (warns) ...re-trying.
  • 11:52:42 (warns) FAILED on build_nodes query (MetaData), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:52:42 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:52:42 (warns) ...re-trying.
  • 11:47:42 (warns) FAILED on build_nodes query (MetaData), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:47:42 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:47:42 (warns) ...re-trying.
  • 11:42:42 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:42:42 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:42:42 (infos) Importing 128000 rows from publish_metadata_chunk_2.csv
  • 11:38:41 (infos) Waiting 4 minutes for the part 2 of 24 to be added to neo4j. Nodes: 0; Traits: 0
  • 11:38:14 (warns) ...re-trying.
  • 11:33:14 (warns) FAILED on build_nodes query (MetaData), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:33:14 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:33:14 (warns) ...re-trying.
  • 11:28:14 (warns) FAILED on build_nodes query (MetaData), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:28:14 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:28:14 (warns) ...re-trying.
  • 11:23:14 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:23:14 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:23:14 (infos) Importing 128000 rows from publish_metadata_chunk_1.csv
  • 11:23:13 (warns) Found 2980195 rows, will break up into 24 of 128000
  • 11:23:12 (infos) adding new metadata
  • 11:23:10 (warns) ...re-trying.
  • 11:18:09 (warns) FAILED on build_nodes query (Trait), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:18:09 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:18:09 (warns) ...re-trying.
  • 11:13:09 (warns) FAILED on build_nodes query (Trait), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:13:09 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when