dcsimg

Import Log for Global Biotic Interactions

  • Started: April 14, 2024 10:30
  • Completed: 12:17:07.000
  • Failed: No.
  • Status: completed

Events (most recent first):

  • 20:18:48.000 (infos) /data/Globi/publish_metadata.tsv: Scheme missing.
  • 20:18:48.000 (warns) USING wget TO RETRIEVE FULL FILE...
  • 20:18:48.000 (warns) TRUNCATED RESPONSE! Got 576990239 bytes out of 747585637 from https://content.eol.org/data/Globi/publish_metadata.tsv
  • 20:18:05.000 (infos) Connecting to https://content.eol.org/ ...
  • 20:18:05.000 (infos) /data/Globi/publish_traits_1676047141.tsv: Scheme missing.
  • 20:18:04.000 (warns) USING wget TO RETRIEVE FULL FILE...
  • 20:18:04.000 (warns) TRUNCATED RESPONSE! Got 418119463 bytes out of 798115280 from https://content.eol.org/data/Globi/publish_traits_1676047141.tsv
  • 20:17:31.000 (infos) Connecting to https://content.eol.org/ ...
  • 20:17:29.000 (infos) polling for trait diff metadata: /resources/20/publish_diffs.json?since=1712961110
  • 12:17:07.000 (ends) Complete
  • 12:17:07.000 (ends) TOTAL TIME: 1.8h
  • 12:14:10.000 (warns) FAILED on build_nodes query (MetaData), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 12:14:10.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 12:14:10.000 (warns) ...re-trying.
  • 12:09:10.000 (warns) FAILED on build_nodes query (MetaData), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 12:09:10.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 12:09:10.000 (warns) ...re-trying.
  • 12:04:10.000 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 12:04:10.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 12:04:10.000 (infos) Importing 128000 rows from publish_metadata_chunk_3.csv
  • 11:58:09.000 (infos) Waiting 6 minutes for the part 3 of 24 to be added to neo4j. Nodes: 0; Traits: 0
  • 11:57:42.000 (warns) ...re-trying.
  • 11:52:42.000 (warns) FAILED on build_nodes query (MetaData), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:52:42.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:52:42.000 (warns) ...re-trying.
  • 11:47:42.000 (warns) FAILED on build_nodes query (MetaData), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:47:42.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:47:42.000 (warns) ...re-trying.
  • 11:42:42.000 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:42:42.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:42:42.000 (infos) Importing 128000 rows from publish_metadata_chunk_2.csv
  • 11:38:41.000 (infos) Waiting 4 minutes for the part 2 of 24 to be added to neo4j. Nodes: 0; Traits: 0
  • 11:38:14.000 (warns) ...re-trying.
  • 11:33:14.000 (warns) FAILED on build_nodes query (MetaData), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:33:14.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:33:14.000 (warns) ...re-trying.
  • 11:28:14.000 (warns) FAILED on build_nodes query (MetaData), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:28:14.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:28:14.000 (warns) ...re-trying.
  • 11:23:14.000 (warns) FAILED on build_nodes query (MetaData), will re-try 3 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:23:14.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:23:14.000 (infos) Importing 128000 rows from publish_metadata_chunk_1.csv
  • 11:23:13.000 (warns) Found 2980195 rows, will break up into 24 of 128000
  • 11:23:12.000 (infos) adding new metadata
  • 11:23:10.000 (warns) ...re-trying.
  • 11:18:09.000 (warns) FAILED on build_nodes query (Trait), will re-try 1 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:18:09.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when
  • 11:18:09.000 (warns) ...re-trying.
  • 11:13:09.000 (warns) FAILED on build_nodes query (Trait), will re-try 2 times after 5 minute pause (the site may be too busy to serve the CSV to Neo4j)...
  • 11:13:09.000 (warns) undefined local variable or method `where' for #<TraitBank::Slurp:0x0000559c02006178> Did you mean? wheres when