Summary.mw-parser-output table.commons-file-information-table,.mw-parser-output.fileinfotpl-type-information{border:1px solid #a2a9b1;background-color:#f8f9fa;padding:5px;font-size:95%;border-spacing:2px;box-sizing:border-box;margin:0;width:100%}.mw-parser-output table.commons-file-information-table>tbody>tr,.mw-parser-output.fileinfotpl-type-information>tbody>tr{vertical-align:top}.mw-parser-output table.commons-file-information-table>tbody>tr>td,.mw-parser-output table.commons-file-information-table>tbody>tr>th,.mw-parser-output.fileinfotpl-type-information>tbody>tr>td,.mw-parser-output.fileinfotpl-type-information>tbody>tr>th{padding:4px}.mw-parser-output.fileinfo-paramfield{background:#ccf;text-align:right;padding-right:0.4em;width:15%;font-weight:bold}.mw-parser-output.commons-file-information-table+table.commons-file-information-table,.mw-parser-output.commons-file-information-table+div.commons-file-information-table>table{border-top:0;padding-top:0;margin-top:-8px}@media only screen and (max-width:719px){.mw-parser-output table.commons-file-information-table,.mw-parser-output.commons-file-information-table.fileinfotpl-type-information{border-spacing:0;padding:0;word-break:break-word;width:100%!important}.mw-parser-output.commons-file-information-table>tbody,.mw-parser-output.fileinfotpl-type-information>tbody{display:block}.mw-parser-output.commons-file-information-table>tbody>tr>td,.mw-parser-output.commons-file-information-table>tbody>tr>th,.mw-parser-output.fileinfotpl-type-information>tbody>tr>td,.mw-parser-output.fileinfotpl-type-information>tbody>tr>th{padding:0.2em 0.4em;text-align:left;text-align:start}.mw-parser-output.commons-file-information-table>tbody>tr,.mw-parser-output.fileinfotpl-type-information>tbody>tr{display:flex;flex-direction:column}.mw-parser-output.commons-file-information-table+table.commons-file-information-table,.mw-parser-output.commons-file-information-table+div.commons-file-information-table>table{margin-top:-1px}.mw-parser-output.fileinfo-paramfield{box-sizing:border-box;flex:1 0 100%;width:100%}} Description: English: Glycoside hydrolases (GH) and polysaccharide lyases of Orciraptor agilis, with details on a highly expressed putative endocellulase. (A) Top 50 most highly expressed CAZymes of the glycoside hydrolase (GH) and polysaccharide lyases (PL) families in the “attacking” condition. Expression levels are shown as transcripts per million (TPMs). A red bar indicates upregulation (log2 fold change ≥ 1, adjusted p value < 0.001) in the attacking versus “gliding” condition. The main substrates of the respective CAZyme families are listed. The colored boxes indicate whether the contig is complete (“Comp.,” gray) and has a signal peptide (“SP,” blue) or transmembrane domains (“TMD,” purple). Contigs annotated as CAZymes with putative endoglucanase function (EC 3.2.1.4) are marked with a light blue dot. Contigs annotated as CAZymes that target chitin are marked with a yellow dot. (B) Expression levels as normalized counts of the most highly expressed GH5_5 contig (GH5_5A). Each dot represents one biological replicate. (C) Schematic depiction of the GH5_5A functional domains. (D) In silico structure prediction of the GH5_5 domain from the Orciraptor GH5_5A shown next to an endoglucanase from Thermoascus aurantiacus. (E) Radial phylogenetic tree of GH5_5 family proteins from bacteria and eukaryotes. Highlighted are the three GH5_5 sequences from O. agilis. Ultrafast bootstrap values are shown as branch support. Date: 13 June 2022. Source: Fig. 3 at
https://www.cell.com/current-biology/fulltext/S0960-9822(22)00852-1 Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation. In: Cell Current Biology, S0960-9822(22)00852-1;
doi:10.1016/j.cub.2022.05.049,
PMID 35700733. Author: Jennifer V. Gerbracht, Tommy Harding, Alastair G. B. Simpson, Andrew J. Roger, Sebastian Hess. Other versions:
This file has multiple extracted images:
Orciraptor-gr3d.jpg Orciraptor-gr3e.jpg.
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