Summary.mw-parser-output table.commons-file-information-table,.mw-parser-output.fileinfotpl-type-information{border:1px solid #a2a9b1;background-color:#f8f9fa;padding:5px;font-size:95%;border-spacing:2px;box-sizing:border-box;margin:0;width:100%}.mw-parser-output table.commons-file-information-table>tbody>tr,.mw-parser-output.fileinfotpl-type-information>tbody>tr{vertical-align:top}.mw-parser-output table.commons-file-information-table>tbody>tr>td,.mw-parser-output table.commons-file-information-table>tbody>tr>th,.mw-parser-output.fileinfotpl-type-information>tbody>tr>td,.mw-parser-output.fileinfotpl-type-information>tbody>tr>th{padding:4px}.mw-parser-output.fileinfo-paramfield{background:#ccf;text-align:right;padding-right:0.4em;width:15%;font-weight:bold}.mw-parser-output.commons-file-information-table+table.commons-file-information-table,.mw-parser-output.commons-file-information-table+div.commons-file-information-table>table{border-top:0;padding-top:0;margin-top:-8px}@media only screen and (max-width:719px){.mw-parser-output table.commons-file-information-table,.mw-parser-output.commons-file-information-table.fileinfotpl-type-information{border-spacing:0;padding:0;word-break:break-word;width:100%!important}.mw-parser-output.commons-file-information-table>tbody,.mw-parser-output.fileinfotpl-type-information>tbody{display:block}.mw-parser-output.commons-file-information-table>tbody>tr>td,.mw-parser-output.commons-file-information-table>tbody>tr>th,.mw-parser-output.fileinfotpl-type-information>tbody>tr>td,.mw-parser-output.fileinfotpl-type-information>tbody>tr>th{padding:0.2em 0.4em;text-align:left;text-align:start}.mw-parser-output.commons-file-information-table>tbody>tr,.mw-parser-output.fileinfotpl-type-information>tbody>tr{display:flex;flex-direction:column}.mw-parser-output.commons-file-information-table+table.commons-file-information-table,.mw-parser-output.commons-file-information-table+div.commons-file-information-table>table{margin-top:-1px}.mw-parser-output.fileinfo-paramfield{box-sizing:border-box;flex:1 0 100%;width:100%}} Description: English: Carbohydrate-binding modules (CBMs), lytic polysaccharide monooxygenases (LPMOs), and other chitin-related factors expressed in Orciraptor agilis. (A) Top 50 most highly expressed contigs annotated with carbohydrate-binding modules (CBMs) in the “attacking” condition. Expression levels are shown as transcripts per million (TPMs). A red bar indicates upregulation (log2 fold change ≥ 1, adjusted p value < 0.001) in the “attacking” versus “gliding” condition. The targeted carbohydrates of the respective CBMs are listed. The colored boxes indicate whether the contig is complete (“Comp.,” gray) and has a signal peptide (“SP,” blue) or transmembrane domains (“TMD,” purple). (B) Schematic depiction of the most highly expressed chitin-related contig. (C) MA plot (“attacking” versus “gliding” condition) depicting the expression levels of contigs annotated with a chitin-related function. (D) Expression levels of contigs annotated as AA11 shown as transcripts per million (TPM). A red bar indicates upregulation (log2 fold change ≥ 1, adjusted p value < 0.001) in the “attacking” versus “gliding” condition. The colored boxes indicate whether the contig is complete (“Comp.,” gray) and has a signal peptide (“SP,” blue) or transmembrane domains (“TMD,” purple). (E) Schematic depiction of the most highly expressed AA11 from O. agilis. (F) In silico structure prediction of the functional domain of the AA11-type LPMO from O. agilis next to the AA11 LPMO from Aspergillus oryzae (residues 1–151). The copper cofactor (orange) and three binding residues (red) in the Orciraptor structure were predicted by COACH and COFACTOR. (G) Details of the ligand-binding sites of the structures shown in (F). Date: 13 June 2022. Source: Fig. 4 at
https://www.cell.com/current-biology/fulltext/S0960-9822(22)00852-1 Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation. In: Cell Current Biology, S0960-9822(22)00852-1;
doi:10.1016/j.cub.2022.05.049,
PMID 35700733. Author: Jennifer V. Gerbracht, Tommy Harding, Alastair G. B. Simpson, Andrew J. Roger, Sebastian Hess. Other versions:
This file has multiple extracted images:
Orciraptor-gr4f.jpg Orciraptor-gr4g.jpg.
.jpg){kind=link}
